Tamar Pinhas

Be'er Sheva, South District, Israel Contact Info
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About

Experienced developer and team lead with a demonstrated history of working in the…

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Experience & Education

  • Wix.com

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Licenses & Certifications

Publications

  • Efficient edit distance with duplications and contractions

    Algorithms for Molecular Biology (AMB)

  • Edit Distance with Duplications and Contractions Revisited

    Combinatorial Pattern Matching (CPM 2011)

  • SA-REPC – Sequence Alignment with Regular Expression Path Constraint

    4th International Conference on Language and Automata Theory and Applications 2010

    In this paper, we define a novel variation on the constrained sequence alignment problem, the Sequence Alignment with Regular Expression Path Constraint problem, in which the constraint is given in the form of a regular expression. Our definition extends and generalizes the existing definitions of alignment-path constrained sequence alignments to the expressive power of regular expressions. We give a solution for the new variation of the problem and demonstrate its application to integrate…

    In this paper, we define a novel variation on the constrained sequence alignment problem, the Sequence Alignment with Regular Expression Path Constraint problem, in which the constraint is given in the form of a regular expression. Our definition extends and generalizes the existing definitions of alignment-path constrained sequence alignments to the expressive power of regular expressions. We give a solution for the new variation of the problem and demonstrate its application to integrate microRNA-target interaction patterns into the target prediction computation. Our approach can serve as an efficient filter for more computationally demanding target prediction filtration algorithms. We compare our implementation for the SA-REPC problem, cAlign, to other microRNA target prediction algorithms.

    Other authors
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Languages

  • English

    Native or bilingual proficiency

  • Hebrew

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