From Waste to Feed | Insect Biotech Research Group
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Jul 10, 2024 - JavaScript
From Waste to Feed | Insect Biotech Research Group
Scripts for a manuscript titled "Subsurface Microbial Communities Reflect Regional-Scale Groundwater Hydraulic Connectivity" (submitted)
StrainIQ is an n-gram based method to identify and quantify microbial communities in metagenomics samples.
Material for the lab course on anaerobic digestion
A general 16S rDNA sequencing analysis pipeline
A metabolic modeling workflow for communities of organisms in an nasal medium.
A coarse-grained biochemical resource allocation model of phototrophic growth.
Structured Queries and analyses used with MetamapsDB
My intership at the IBEAS lab
Taller introductorio orientado a la visualización, análisis estadístico y ecológico en R, dirigido al manejo de datos en investigación, e impartido para la PUC durante 2021.
This repository introduces the codes applied to the nasal microbial community of the latest available curated GEMs of D. pigrum and S. aureus.
Reproducible documentation for "Heussler and Klammsteiner et al. (2023). Microbial influences on black soldier fly reproduction: A focus on egg surface colonization. Research Square Preprint"
Interactive table for "Marcos Zambrano et al. (2023) A Toolbox of Machine Learning Software to Support Microbiome Analysis. Frontiers in Microbiology 14, 1250806"
October 2017 Microbial Community Analysis Workshop at ILRI Kenya
Data and code for Kimbell et al., 2021
Implementation of soft body interaction models (for multiple particles). Includes applications to (1) soil mechanics, (2) microbiology. Variants of the method: discrete element method, individual based model, molecular dynamics.
GitHub repository to support the development of the thesis "Development of microbial community simulation methods to characterize and analyze the effects of metal concentrations on pathogen silencing/promotion".
a versatile approach to integrate heterogeneous datasets
Personal website
Reproduce the figures in "The genetic basis for adaptation of model-designed syntrophic co-cultures"
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