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Commits on Oct 7, 2014

• Added optional use of trimmomatic to remove adaptor contamination

  

  Guillaume Jospin

  committedOct 7, 2014
  73b51f5

Commits on Jan 14, 2014

• removed flash_250

  

  Guillaume Jospin

  committedJan 14, 2014
  71d9466

• Pointed to new location of demultiplex script

  

  Guillaume Jospin

  committedJan 14, 2014
  0e47319

Commits on Nov 21, 2013

• Removed a stop to processing the file for testing purposes

  

  Guillaume Jospin

  committedNov 21, 2013
  73c8bf7

• Added a check for presence of barcode sequences

  

  Guillaume Jospin

  committedNov 21, 2013
  0d55b80

Commits on Nov 20, 2013

• Added file checks, comments, warning messages. Moved summary.txt to the output dir. Added a run info file to keep track of what parameters were used.

  

  Guillaume Jospin

  committedNov 20, 2013
  2e51b53

Commits on Jun 27, 2013

• Looking at both barcodes as a concatenation. Allowing 1 mismatch per barcode and allowing 2 mismatches per long barcodes

  

  Guillaume Jospin

  committedJun 27, 2013
  2b17dee

Commits on May 28, 2013

• Added non merged qiime ready files that include the mates that were not merged using flash.

  

  Guillaume Jospin

  committedMay 28, 2013
  7344d53

Commits on May 21, 2013

• Removed a testing statement

  

  Guillaume Jospin

  committedMay 21, 2013
  6c50308

Commits on May 20, 2013

• Fixed typos and added --no-mismatch

  

  Guillaume Jospin

  committedMay 20, 2013
  bf70a31

Commits on May 7, 2013

• Reverse complemented the qiime_ready reads

  

  Guillaume Jospin

  committedMay 7, 2013
  6fa2a87

Commits on May 6, 2013

• Fixed the read generation for qiime ready files

  

  Guillaume Jospin

  committedMay 6, 2013
  f4e73ca

Commits on Apr 2, 2013

• Fixe bugs, made intermediate directories and added qiime ready headers

  

  Guillaume Jospin

  committedApr 2, 2013
  b962be0

• Modified flash to falsh_250

  

  Guillaume Jospin

  committedApr 2, 2013
  6b74a8d

• flash_250 is a version of the flash program to merge reads that allows 250bp reads instead of the max 170

  

  Guillaume Jospin

  committedApr 2, 2013
  efcf969

• Need to clean up options, what files to output and get the fasta files in qiime ready format

  

  Guillaume Jospin

  committedApr 2, 2013
  309e5d6

Commits on Mar 22, 2013

• Removed unused files

  

  Guillaume Jospin

  committedMar 22, 2013
  128fa13

• Changed the files names again and zipped them

  

  Guillaume Jospin

  committedMar 22, 2013
  e0785da

• Merge branch 'master' of https://github.com/gjospin/Demul_trim_prep

  

  Guillaume Jospin

  committedMar 22, 2013
  2a8734e

• Changed file names to match MiSeq filenames

  

  Guillaume Jospin

  committedMar 22, 2013
  7aa2559

Commits on Mar 19, 2013

• Updated mapping file in correct format

  hollybik

  committedMar 19, 2013
  641c5e6

Commits on Mar 13, 2013

• Uploaded test data and mapping file

  hollybik

  committedMar 13, 2013
  0634f49

Commits on Mar 5, 2013

• Initial commit

  

  Guillaume Jospin

  committedMar 5, 2013
  12b93b5