Cenozoic history of the tropical marine biodiversity hotspot

This zipped file contains:

(1) Census data: Cenozoic fossil ostracod census dataset from 216 samples across the IAA region, totalling 47,727 specimens for 874 morphospecies (including 94 species records where at least part of a genus could not be identified to species level and were treated as one species record each in the analyses);

(2) Dataset: it includes the original dataset for the IAA ostracod with the fossil occurrences (species assignation and stratigraphic ages);

(3) Commands: it includes a command list of the Bayesian analyses performed on the ostracod datasets using PyRate;

(4) fixShift: it includes two text files to set up the time intervals used in the BDCS model for constraining the periods in which rates are estimated in PyRate;

(5) BDCS: it includes the folders for the different birth-death with constrained shifts (BDCS) models in PyRate including the outputs and plots of results;

(6) MBD: it includes the folders for the different multivariate birth-death (MBD) models in PyRate, performed with the files including the times of speciation and extinction (TsTe) for the IAA ostracods and the outputs of the analyses.