Automated labeling of the human brain: a preliminary report on the development and evaluation of a forward-transform method
- PMID: 20408222
- PMCID: PMC2860189
- DOI: 10.1002/(SICI)1097-0193(1997)5:4<238::AID-HBM6>3.0.CO;2-4
Automated labeling of the human brain: a preliminary report on the development and evaluation of a forward-transform method
Abstract
A forward-transform method for retrieving brain labels from the 1988 Talairach Atlas using x-y-z coordinates is presented. A hierarchical volume-occupancy labeling scheme was created to simplify the organization of atlas labels using volume and subvolumetric components. Segmentation rules were developed to define boundaries that were not given explicitly in the atlas. The labeling scheme and segmentation rules guided the segmentation and labeling of 160 contiguous regions within the atlas. A unique three-dimensional (3-D) database label server called the Talairach Daemon (http://ric.uthscsa.edu/projects) was developed for serving labels keyed to the Talairach coordinate system. Given an x-y-z Talairach coordinate, a corresponding hierarchical listing of labels is returned by the server. The accuracy and precision of the forward-transform labeling method is now under evaluation.
Copyright (c) 1997 Wiley-Liss, Inc.
Figures
Similar articles
-
Automated Talairach atlas labels for functional brain mapping.Hum Brain Mapp. 2000 Jul;10(3):120-31. doi: 10.1002/1097-0193(200007)10:3<120::aid-hbm30>3.0.co;2-8. Hum Brain Mapp. 2000. PMID: 10912591 Free PMC article.
-
A general XML schema and SPM toolbox for storage of neuro-imaging results and anatomical labels.Neuroinformatics. 2006;4(2):199-212. doi: 10.1385/ni:4:2:199. Neuroinformatics. 2006. PMID: 16845169
-
Atlas-assisted localization analysis of functional images.Med Image Anal. 2001 Sep;5(3):207-20. doi: 10.1016/s1361-8415(01)00043-3. Med Image Anal. 2001. PMID: 11524227
-
Bias between MNI and Talairach coordinates analyzed using the ICBM-152 brain template.Hum Brain Mapp. 2007 Nov;28(11):1194-205. doi: 10.1002/hbm.20345. Hum Brain Mapp. 2007. PMID: 17266101 Free PMC article.
-
A review of atlas-based segmentation for magnetic resonance brain images.Comput Methods Programs Biomed. 2011 Dec;104(3):e158-77. doi: 10.1016/j.cmpb.2011.07.015. Epub 2011 Aug 25. Comput Methods Programs Biomed. 2011. PMID: 21871688 Review.
Cited by
-
Investigating the neural effects of typicality and predictability for face and object stimuli.PLoS One. 2024 May 22;19(5):e0293781. doi: 10.1371/journal.pone.0293781. eCollection 2024. PLoS One. 2024. PMID: 38776350 Free PMC article.
-
Graded decisions in the human brain.Nat Commun. 2024 May 21;15(1):4308. doi: 10.1038/s41467-024-48342-w. Nat Commun. 2024. PMID: 38773117 Free PMC article.
-
Magnetoencephalography Atlas Viewer for Dipole Localization and Viewing.J Imaging. 2024 Mar 28;10(4):80. doi: 10.3390/jimaging10040080. J Imaging. 2024. PMID: 38667978 Free PMC article.
-
Distinct neural mechanisms for action access and execution in the human brain: insights from an fMRI study.Cereb Cortex. 2024 Apr 1;34(4):bhae163. doi: 10.1093/cercor/bhae163. Cereb Cortex. 2024. PMID: 38629799 Free PMC article.
-
Contributions of the left and right thalami to language: A meta-analytic approach.Brain Struct Funct. 2024 Apr 16. doi: 10.1007/s00429-024-02795-3. Online ahead of print. Brain Struct Funct. 2024. PMID: 38625556
References
-
- Collins DL, Neelin P, Peters YM, Evans AC. Automatic 3D intersubject registration of MR volumetric data in standardized space. J Comput Assist Tomogr. 1994;18:192–205. - PubMed
-
- Collins DL, Holmes CJ, Peters TM, Evans AC. Automatic 3-D model-based neuroanatomical segmentation. Hum Brain Mapping. 1995;3:190–208.
-
- Fox PT. Spatial normalization origins: Objectives, applications, and alternatives. Hum Brain Mapping. 1995;3:161–164.
-
- Fox PT, Mikiten S, Davis G, Lancaster JL. BrainMap: A database of human functional brain mapping. In: Thatcher RW, Zeffiro T, Huerta M, editors. Advances in Functional Neuroimaging: Technical Foundations. Academic; Orlando: 1994. pp. 95–106.
-
- Freitas CS, Summerlin JL, Lancaster JL, Fox PT. Talairach Daemon: Automated mapping of surface anatomy onto standard coordinates. Society for Neuroscience. 1996;22:675.
Grants and funding
LinkOut - more resources
Full Text Sources
Other Literature Sources