[HTML][HTML] The DOE-JGI Standard operating procedure for the annotations of microbial genomes
K Mavromatis, NN Ivanova, IMA Chen, E Szeto…�- Standards in genomic�…, 2009 - Springer
Standards in genomic sciences, 2009•Springer
Abstract The DOE-JGI Microbial Annotation Pipeline (DOE-JGI MAP) supports gene
prediction and/or functional annotation of microbial genomes towards comparative analysis
with the Integrated Microbial Genome [1](IMG) system. DOE-JGI MAP annotation is applied
on nucleotide sequence datasets included in the IMG-ER (Expert Review) version of IMG via
the IMG ER submission site. Users can submit the sequence datasets consisting of one or
more contigs in a multi-fasta file. DOE-JGI MAP annotation includes prediction of protein�…
prediction and/or functional annotation of microbial genomes towards comparative analysis
with the Integrated Microbial Genome [1](IMG) system. DOE-JGI MAP annotation is applied
on nucleotide sequence datasets included in the IMG-ER (Expert Review) version of IMG via
the IMG ER submission site. Users can submit the sequence datasets consisting of one or
more contigs in a multi-fasta file. DOE-JGI MAP annotation includes prediction of protein�…
Abstract
The DOE-JGI Microbial Annotation Pipeline (DOE-JGI MAP) supports gene prediction and/or functional annotation of microbial genomes towards comparative analysis with the Integrated Microbial Genome [1] (IMG) system. DOE-JGI MAP annotation is applied on nucleotide sequence datasets included in the IMG-ER (Expert Review) version of IMG via the IMG ER submission site. Users can submit the sequence datasets consisting of one or more contigs in a multi-fasta file. DOE-JGI MAP annotation includes prediction of protein coding and RNA genes, as well as repeats and assignment of product names to these genes.
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