IMG: the integrated microbial genomes database and comparative analysis system
VM Markowitz, IMA Chen, K Palaniappan…�- Nucleic acids�…, 2012 - academic.oup.com
… Integrated Microbial Genomes (IMG) system integrates publicly available draft and complete
microbial genomes … IMG employs NCBI's RefSeq resource (1) as its main source of public …
microbial genomes … IMG employs NCBI's RefSeq resource (1) as its main source of public …
IMG 4 version of the integrated microbial genomes comparative analysis system
VM Markowitz, IMA Chen, K Palaniappan…�- Nucleic acids�…, 2014 - academic.oup.com
… IMG’s data content and analytical capabilities have increased continuously since its first … in
the 2012 NAR Database Issue, IMG’s annotation and data integration pipelines have evolved …
the 2012 NAR Database Issue, IMG’s annotation and data integration pipelines have evolved …
IMG/M: the integrated metagenome data management and comparative analysis system
VM Markowitz, IMA Chen, K Chu, E Szeto…�- Nucleic acids�…, 2012 - academic.oup.com
… IMG/M provides support for such analysis by integrating metagenome data sets with isolate
microbial genomes from the integrated microbial genome (IMG) system (13). Using NCBI’s …
microbial genomes from the integrated microbial genome (IMG) system (13). Using NCBI’s …
[HTML][HTML] IMG/M-HMP: a metagenome comparative analysis system for the Human Microbiome Project
VM Markowitz, IMA Chen, K Chu, E Szeto…�- PloS one, 2012 - journals.plos.org
… IMG/M provides support for such analysis by integrating metagenome datasets with
isolate microbial genomes from the Integrated Microbial Genome (IMG) system [9]. …
isolate microbial genomes from the Integrated Microbial Genome (IMG) system [9]. …
IMG/M 4 version of the integrated metagenome comparative analysis system
VM Markowitz, IMA Chen, K Chu, E Szeto…�- Nucleic acids�…, 2014 - academic.oup.com
… the 2012 NAR Database Issue, IMG/M’s database architecture, annotation and data integration
pipelines and analysis … a specific microbial genome sequencing project and 581 genome …
pipelines and analysis … a specific microbial genome sequencing project and 581 genome …
IMG/M: integrated genome and metagenome comparative data analysis system
IMA Chen, VM Markowitz, K Chu…�- Nucleic acids�…, 2016 - academic.oup.com
… However, starting from November 2012, all new sequence data are … enhance its tools for
comparative analysis of unassembled reads, … in the integrated microbial genomes (IMG) system …
comparative analysis of unassembled reads, … in the integrated microbial genomes (IMG) system …
[HTML][HTML] Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
IMA Chen, VM Markowitz, K Palaniappan, E Szeto…�- BMC genomics, 2016 - Springer
… genomes in IMG further complicate the problem. Second, IMG already provides many
comparative analysis … “missing” genes that were overlooked by the gene calling pipelines. That is, …
comparative analysis … “missing” genes that were overlooked by the gene calling pipelines. That is, …
[HTML][HTML] Improving microbial genome annotations in an integrated database context
IMA Chen, VM Markowitz, K Chu, I Anderson…�- PLoS�…, 2013 - journals.plos.org
… Effective comparative analysis of microbial genomes requires a consistent and … microbial
genome annotations in the context of the Integrated Microbial Genomes (IMG) family of systems…
genome annotations in the context of the Integrated Microbial Genomes (IMG) family of systems…
[HTML][HTML] Ten years of maintaining and expanding a microbial genome and metagenome analysis system
VM Markowitz, IMA Chen, K Chu, A Pati…�- …�in microbiology, 2015 - cell.com
… processed using IMG's microbial genome and metagenome … and are integrated into the data
warehouse using IMG's data … of microbial genome and metagenome comparative analysis …
warehouse using IMG's data … of microbial genome and metagenome comparative analysis …
Maintaining a microbial genome & metagenome data analysis system in an academic setting
IMA Chen, VM Markowitz, E Szeto…�- …�Statistical Database�…, 2014 - dl.acm.org
… addressed for maintaining and extending the Integrated Microbial Genome (IMG) system. …
comparative analysis of microbial genomes and metagenomes in a comprehensive integrated …
comparative analysis of microbial genomes and metagenomes in a comprehensive integrated …