A survey of tools for variant analysis of next-generation genome sequencing data
S Pabinger, A Dander, M Fischer…�- Briefings in�…, 2014 - academic.oup.com
Recent advances in genome sequencing technologies provide unprecedented opportunities
to characterize individual genomic landscapes and identify mutations relevant for diagnosis�…
to characterize individual genomic landscapes and identify mutations relevant for diagnosis�…
Needles in stacks of needles: finding disease-causal variants in a wealth of genomic data
GM Cooper, J Shendure�- Nature Reviews Genetics, 2011 - nature.com
Genome and exome sequencing yield extensive catalogues of human genetic variation.
However, pinpointing the few phenotypically causal variants among the many variants�…
However, pinpointing the few phenotypically causal variants among the many variants�…
[HTML][HTML] Exome sequencing and analysis of 454,787 UK Biobank participants
JD Backman, AH Li, A Marcketta, D Sun, J Mbatchou…�- Nature, 2021 - nature.com
A major goal in human genetics is to use natural variation to understand the phenotypic
consequences of altering each protein-coding gene in the genome. Here we used exome�…
consequences of altering each protein-coding gene in the genome. Here we used exome�…
[HTML][HTML] REVEL: an ensemble method for predicting the pathogenicity of rare missense variants
NM Ioannidis, JH Rothstein, V Pejaver…�- The American Journal of�…, 2016 - cell.com
The vast majority of coding variants are rare, and assessment of the contribution of rare
variants to complex traits is hampered by low statistical power and limited functional data�…
variants to complex traits is hampered by low statistical power and limited functional data�…
Association analysis identifies 65 new breast cancer risk loci
Breast cancer risk is influenced by rare coding variants in susceptibility genes, such as
BRCA1, and many common, mostly non-coding variants. However, much of the genetic�…
BRCA1, and many common, mostly non-coding variants. However, much of the genetic�…
[HTML][HTML] Genomic and molecular landscape of DNA damage repair deficiency across the cancer genome atlas
TA Knijnenburg, L Wang, MT Zimmermann…�- Cell reports, 2018 - cell.com
DNA damage repair (DDR) pathways modulate cancer risk, progression, and therapeutic
response. We systematically analyzed somatic alterations to provide a comprehensive view�…
response. We systematically analyzed somatic alterations to provide a comprehensive view�…
[HTML][HTML] ACE2 and TMPRSS2 variants and expression as candidates to sex and country differences in COVID-19 severity in Italy
As the outbreak of coronavirus disease 2019 (COVID-19) progresses, prognostic markers for
early identification of high-risk individuals are an urgent medical need. Italy has one of the�…
early identification of high-risk individuals are an urgent medical need. Italy has one of the�…
Sequencing of 640,000 exomes identifies GPR75 variants associated with protection from obesity
INTRODUCTION Obesity accounts for a substantial and growing burden of disease globally.
Body adiposity is highly heritable, and human genetic studies can lead to biological and�…
Body adiposity is highly heritable, and human genetic studies can lead to biological and�…
dbNSFP v3. 0: A one‐stop database of functional predictions and annotations for human nonsynonymous and splice‐site SNVs
The purpose of the dbNSFP is to provide a one‐stop resource for functional predictions and
annotations for human nonsynonymous single‐nucleotide variants (nsSNVs) and splice‐site�…
annotations for human nonsynonymous single‐nucleotide variants (nsSNVs) and splice‐site�…
[HTML][HTML] dbNSFP v4: a comprehensive database of transcript-specific functional predictions and annotations for human nonsynonymous and splice-site SNVs
Whole exome sequencing has been increasingly used in human disease studies.
Prioritization based on appropriate functional annotations has been used as an�…
Prioritization based on appropriate functional annotations has been used as an�…