Is target-based drug discovery efficient? Discovery and “off-target” mechanisms of all drugs
A Sadri�- Journal of medicinal chemistry, 2023 - ACS Publications
Target-based drug discovery is the dominant paradigm of drug discovery; however, a
comprehensive evaluation of its real-world efficiency is lacking. Here, a manual systematic�…
comprehensive evaluation of its real-world efficiency is lacking. Here, a manual systematic�…
[HTML][HTML] A comprehensive survey of prospective structure-based virtual screening for early drug discovery in the past fifteen years
H Zhu, Y Zhang, W Li, N Huang�- International Journal of Molecular�…, 2022 - mdpi.com
Structure-based virtual screening (SBVS), also known as molecular docking, has been
increasingly applied to discover small-molecule ligands based on the protein structures in�…
increasingly applied to discover small-molecule ligands based on the protein structures in�…
[HTML][HTML] Modeling the expansion of virtual screening libraries
Recently,'tangible'virtual libraries have made billions of molecules readily available.
Prioritizing these molecules for synthesis and testing demands computational approaches�…
Prioritizing these molecules for synthesis and testing demands computational approaches�…
[HTML][HTML] Design and structural validation of peptide–drug conjugate ligands of the kappa-opioid receptor
E Muratspahić, K Deibler, J Han, N Tomašević…�- Nature�…, 2023 - nature.com
Despite the increasing number of GPCR structures and recent advances in peptide design,
the development of efficient technologies allowing rational design of high-affinity peptide�…
the development of efficient technologies allowing rational design of high-affinity peptide�…
[HTML][HTML] Docking for EP4R antagonists active against inflammatory pain
S Gahbauer, C DeLeon, JM Braz, V Craik…�- Nature�…, 2023 - nature.com
The lipid prostaglandin E2 (PGE2) mediates inflammatory pain by activating G protein-
coupled receptors, including the prostaglandin E2 receptor 4 (EP4R). Nonsteroidal anti�…
coupled receptors, including the prostaglandin E2 receptor 4 (EP4R). Nonsteroidal anti�…
The art and science of molecular docking
Molecular docking has become an essential part of a structural biologist's and medicinal
chemist's toolkits. Given a chemical compound and the three-dimensional structure of a�…
chemist's toolkits. Given a chemical compound and the three-dimensional structure of a�…
Keeping pace with the explosive growth of chemical libraries with structure‐based virtual screening
J Kuan, M Radaeva, A Avenido…�- Wiley�…, 2023 - Wiley Online Library
Recent efforts to synthetically expand drug‐like chemical libraries have led to the
emergence of unprecedently large virtual databases. This surge of make‐on‐demand�…
emergence of unprecedently large virtual databases. This surge of make‐on‐demand�…
Advances in the discovery of new chemotypes through ultra-large library docking
Introduction The size and complexity of virtual screening libraries in drug discovery have
skyrocketed in recent years, reaching up to multiple billions of accessible compounds�…
skyrocketed in recent years, reaching up to multiple billions of accessible compounds�…
[HTML][HTML] Neuropathic pain; what we know and what we should do about it
PA Smith�- Frontiers in Pain Research, 2023 - frontiersin.org
Neuropathic pain can result from injury to, or disease of the nervous system. It is notoriously
difficult to treat. Peripheral nerve injury promotes Schwann cell activation and invasion of�…
difficult to treat. Peripheral nerve injury promotes Schwann cell activation and invasion of�…
Large-scale docking in the cloud
BI Tingle, JJ Irwin�- Journal of Chemical Information and Modeling, 2023 - ACS Publications
Molecular docking is a pragmatic approach to exploit protein structures for new ligand
discovery, but the growing size of available chemical space is increasingly challenging to�…
discovery, but the growing size of available chemical space is increasingly challenging to�…