Identification of deleterious mutations within three human genomes
Each human carries a large number of deleterious mutations. Together, these mutations
make a significant contribution to human disease. Identification of deleterious mutations�…
make a significant contribution to human disease. Identification of deleterious mutations�…
Understanding human disease mutations through the use of interspecific genetic variation
Data on replacement mutations in genes of disease patients exist in a variety of online
resources. In addition, genome sequencing projects and individual gene sequencing efforts�…
resources. In addition, genome sequencing projects and individual gene sequencing efforts�…
[HTML][HTML] Deleterious-and disease-allele prevalence in healthy individuals: insights from current predictions, mutation databases, and population-scale resequencing
Y Xue, Y Chen, Q Ayub, N Huang, EV Ball…�- The American Journal of�…, 2012 - cell.com
We have assessed the numbers of potentially deleterious variants in the genomes of
apparently healthy humans by using (1) low-coverage whole-genome sequence data from�…
apparently healthy humans by using (1) low-coverage whole-genome sequence data from�…
The evaluation of tools used to predict the impact of missense variants is hindered by two types of circularity
DG Grimm, CA Azencott, F Aicheler, U Gieraths…�- Human�…, 2015 - Wiley Online Library
Prioritizing missense variants for further experimental investigation is a key challenge in
current sequencing studies for exploring complex and Mendelian diseases. A large number�…
current sequencing studies for exploring complex and Mendelian diseases. A large number�…
A probabilistic disease-gene finder for personal genomes
VAAST (the Variant Annotation, Analysis & Search Tool) is a probabilistic search tool for
identifying damaged genes and their disease-causing variants in personal genome�…
identifying damaged genes and their disease-causing variants in personal genome�…
[HTML][HTML] Analysis of missense variants in the human genome reveals widespread gene-specific clustering and improves prediction of pathogenicity
We used a machine learning approach to analyze the within-gene distribution of missense
variants observed in hereditary conditions and cancer. When applied to 840 genes from the�…
variants observed in hereditary conditions and cancer. When applied to 840 genes from the�…
LIST-S2: taxonomy based sorting of deleterious missense mutations across species
The separation of deleterious from benign mutations remains a key challenge in the
interpretation of genomic data. Computational methods used to sort mutations based on�…
interpretation of genomic data. Computational methods used to sort mutations based on�…
CADD: predicting the deleteriousness of variants throughout the human genome
Abstract Combined Annotation-Dependent Depletion (CADD) is a widely used measure of
variant deleteriousness that can effectively prioritize causal variants in genetic analyses�…
variant deleteriousness that can effectively prioritize causal variants in genetic analyses�…
Interpreting missense variants: comparing computational methods in human disease genes CDKN2A, MLH1, MSH2, MECP2, and tyrosinase (TYR)
PA Chan, S Duraisamy, PJ Miller, JA Newell…�- Human�…, 2007 - Wiley Online Library
The human genome contains frequent single‐basepair variants that may or may not cause
genetic disease. To characterize benign vs. pathogenic missense variants, numerous�…
genetic disease. To characterize benign vs. pathogenic missense variants, numerous�…
[HTML][HTML] Assessment of computational methods for predicting the effects of missense mutations in human cancers
Background Recent advances in sequencing technologies have greatly increased the
identification of mutations in cancer genomes. However, it remains a significant challenge to�…
identification of mutations in cancer genomes. However, it remains a significant challenge to�…