Identification of deleterious mutations within three human genomes

S Chun, JC Fay�- Genome research, 2009 - genome.cshlp.org
… likely to be deleterious. Here, we have evaluated the ability of a LRT … identify deleterious
mutations within three human genomes. We identified a similar number of deleterious mutations

[HTML][HTML] Evidence for hitchhiking of deleterious mutations within the human genome

S Chun, JC Fay�- PLoS genetics, 2011 - journals.plos.org
deleterious mutations are rare, a significant fraction is common in the population. For example,
19% of deleterious mutations identified in three human genomesdeleterious mutations

[BOOK][B] Identification of Deleterious and Disease Alleles in a General Population and Preterm Labor Patients

SG Chun - 2012 - search.proquest.com
… manuscript originally published in Genome Research in 2009. Large … identify deleterious
mutations within three human genomes. We identified a similar number of deleterious mutations

Predicting the clinical impact of human mutation with deep neural networks

L Sundaram, H Gao, SR Padigepati, JF McRae, Y Li…�- Nature�…, 2018 - nature.com
… are rare deleterious mutations whose damaging effects on fitness … We next identified human
variants that are identical-by-state … to the number of human genomes and exomes that have …

[HTML][HTML] Predicting mendelian disease-causing non-synonymous single nucleotide variants in exome sequencing studies

MX Li, JSH Kwan, SY Bao, W Yang, SL Ho…�- PLoS�…, 2013 - journals.plos.org
… the human genome is becoming a standard approach in identifying causal genes for human
… For clarity, throughout this paper, being deleterious means that an nsSNV is under purifying …

Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants

W Fu, TD O'connor, G Jun, HM Kang, G Abecasis…�- Nature, 2013 - nature.com
… To more directly identify putatively deleterious SNVs, we used four functional prediction
methods (SIFT 13 , PolyPhen2 (ref. 14), a likelihood ratio test 15 , MutationTaster 16 ) applicable …

Origins and functional impact of copy number variation in the human genome

DF Conrad, D Pinto, R Redon, L Feuk, O Gokcumen…�- Nature, 2010 - nature.com
… with weaker selection against deleterious base substitutions in … observation of indel
enrichment at either end of genes 23 . … investigation of mutation mechanisms to identify probable …

[HTML][HTML] Long runs of homozygosity are enriched for deleterious variation

ZA Szpiech, J Xu, TJ Pemberton, W Peng…�- …�Journal of Human�…, 2013 - cell.com
… homozygotes for strongly deleterious mutations, inbreeding … at putatively neutral sites across
the human genome. … genotypes, probably resulting from identity by descent as the result of …

The first Korean genome sequence and analysis: full genome sequencing for a socio-ethnic group

SM Ahn, TH Kim, S Lee, D Kim, H Ghang…�- Genome�…, 2009 - genome.cshlp.org
human genome at an average density of one indel per 9 kb. … The SJK mitochondrial genome
did not contain deleterious … , we identified 3.4 million SNPs, out of which over 0.4 million (…

The role of deleterious substitutions in crop genomes

TJY Kono, F Fu, M Mohammadi…�- Molecular biology�…, 2016 - academic.oup.com
… Approaches to identify deleterious mutations take one of two forms. Quantitative genetic
approaches have been … A map of human genome variation from population-scale sequencing …